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INGOR
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| CAlgo | Structure search algorithm related utility functions |
| CArgs | |
| CBDE_Data | |
| CBNDC | The BNDC score function |
| CBNDCBuff | Structure of the score buffer for BNDC score function |
| CBNRC | The BNRC score function |
| CBNRC_Data | |
| CBNRC_Global | |
| CBNRC_Model | Model parameters for a single node |
| CBNRC_Work | Structure for working memory |
| CBNRCBuff | |
| CCommand | |
| CDagFilter_t | |
| CDSFMT_T | |
| CEnv | |
| CGreedy | Greedy Hill-Climbing algorithm |
| CGreedyWork | |
| CNNSR | Neighbor Node Sampling and Repeat algorithm |
| CNNSRNodeRank | |
| CNNSRWork | Working structure for the NNSR algorithm |
| CScore | |
| CScoreCache_Buff | |
| CScoreCache_Element | |
| CW128_T | |
| CytAdjGraph | Graph by adjacent matrix |
| CytArray | Expandable array |
| CytBitSet | |
| CytBS | Compiling bootstrapped networks |
| CytBS_t | |
| CytBSpline | B-Spline routines |
| CytCombo | Combination related routines |
| CytCompleteGraph | Complete graph |
| CytCompleteGraphSL | Complete graph |
| CytCX2 | JSON based Cytoscape network file fomrat |
| CytData | General data container |
| CytDBNGraph | |
| CytDLGraph | Graph structure for efficient parents and children handling |
| CytDLGraph_DAG_t | |
| CytDLGraph_Edge_t | |
| CytDoubleArray | Expandable array |
| CytEdge | Network edge |
| CytEdge_t | |
| CytFile | File stream related routines |
| CytGDF | Reads and Writes ytData in GDF format |
| CytGraph | Interface class for handling graph structure |
| CytGraph_t | |
| CytGraphEdgeIter | |
| CytING | JSON based INGOR native network file format |
| CytIntArray | Expandable array |
| CytIO | IO routine abstractions |
| CytIOList | |
| CytJob | Job distribution utility routines |
| CytJSON | JSON parser, writer and Simple Print API |
| CytJSON_work | |
| CytKeyValues | Key-value pairs |
| CytLayout_Pos | |
| CytLib_MemoryTable_t | |
| CytLog | Routines for error logging |
| CytMapGraph | Mapping wrapper of a ytGraph instance |
| CytMath | Mathematical routines |
| CytNetUtils | Utility functions for networks |
| CytNetwork | Network abstraction |
| CytNetwork_t | |
| CytNode | Network node |
| CytNodeList | NodeList network format |
| CytNodeList_int_t | |
| CytObject | The basis class |
| CytOtoPK | Online Topological Ordering by PK Algorithm |
| CytOtoPK_sort_t | |
| CytPaList | Parent list network file format |
| CytParseArgs | Structure for parsing command line arguments |
| CytPCGraph | |
| CytPGraph | |
| CytRNDGraph | Generating random graphs |
| CytRNG | Structure for encapsulating the random number generator |
| CytSGN3 | SGN3 network format |
| CytStat | Statistical routines |
| CytStdioBuff | Standard input buffer |
| CytStdioBuff_t | |
| CytStr | String related utility routines |
| CytStrArray | Expandable array |
| CytStrBuff | Expandable String Buffer |
| CytStrBuff_t | |
| CytTimer | Structure for Timer functions |
| CytTXT | The TXT network file format consisting of parent-child pair edge list |
| CytUtil | Utility functions |
| CytValue | Wrapper class for primitive and other arbitrary types |